paplot example

This is the summary documentation of the analysis results.

Clicking on the link below, you can see each graph.

Mutation Matrix Report

	minimal	...Minimum configuration
	tooltip	...Add optional data for tooltip.
	subplot	....Add subplot for example clinical infomation.

QC Report

	minimal	...Report with only depth-average.
	stack	...Add stack graph.
	variation	...Variant plots.
	brush	...Add select data range

Chromosomal Aberration Report

	minimal	...Minimum configuration
	grouping	...Add grouping to links
	tooltip	...Add optional data for tooltip.

Mutaitonal Signature Report

	minimal	...Report creation with sigunature number set to 2.
#sig 2
	multi type signature	...Report creation with sigunature number set to 2,3,4,5,6.
#sig 2 #sig 3 #sig 4 #sig 5 #sig 6
	stack bar	...Add stack bar plot.
#sig 2 #sig 3 #sig 4 #sig 5 #sig 6

pmsignature Report

※Since background is set, the number of actually output pmsignature is 1 less.

	minimal	...Report creation with pmsigunature number set to 2.
#sig 2
	multi type signature	...Report creation with pmsigunature number set to 2,3,4,5,6.
#sig 2 #sig 3 #sig 4 #sig 5 #sig 6
	stack bar	...Add stack bar plot.
#sig 2 #sig 3 #sig 4 #sig 5 #sig 6
	without background	...Run pmsignature without background. * The actual output pmsignature will be the number as configured (2 here)
#sig 2

For this documentation, the tutorial starts here.

• [English]   http://paplot.readthedocs.org/